Schedule
The course will take place in the room Air (see travel info).
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| Time | Topic | |
| 09:00 | Introduction to Reproducible Research (slides) | |
| 09:45 | Data management and project organization (slides) | |
| 10:15 | Fika break + surprise | |
| 10:45 |
Master your dependencies - environments and reproducibility
- Introduction to the package and environment manager Conda (slides) - Practical tutorial: Conda |
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| 11:30 | Lunch | |
| 12:30 |
Organize your analysis using workflow managers
- Introduction to Snakemake (slides) - Practical tutorial: Snakemake Fika break ~14:15 |
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| 16:15 | Wrap-up (slides) | |
| 16:30 | Free time! | |
| 17:00 | Joint departure for dinner | |
| 17:30 | Course dinner | |
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| Time | Topic | |
| 08:30 |
Distributing and version tracking your code
- Introduction to version control and git (slides) - Practical tutorial: Git Computational notebooks - Introduction to Jupyter (slides) - Practical tutorial: Jupyter Fika break ~10:15 |
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| 11:30 | Lunch | |
| 12:30 |
Reproducible reports
- Introduction to R Markdown (slides) - Practical tutorial: R Markdown Containerization - Introduction to containers (slides) - Practical tutorial: Docker Fika break ~14:15 |
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| 16:00 | Wrap-up (slides) | |
| 16:30 | All done! | |
Teachers:
Leif Wigge
John Sundh
Erik Fasterius
Nanjiang Shu
Per Unneberg
Verena Kutschera
Jakub Westholm