Schedule
The course will be in "10:an", Chemistry building, Chalmers University of Technology, Gothenburg (see travel info).
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| Time | Topic | |
| 09:00 | Introduction to Reproducible Research [slides] | |
| 09:45 | Data management and project organization [slides] | |
| 10:15 | Fika break | |
| 10:45 |
Master your dependencies - environments and reproducibility
- Introduction to the package and environment manager Conda [slides] - Practical tutorial: Conda |
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| 12:00 | Lunch | |
| 13:00 |
Organize your analysis using workflow managers
- Introduction to Snakemake [slides] - Practical tutorial: Snakemake |
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| 16:15 | Wrap-up | |
| 16:30 | Free time! | |
| 17:00 | Joint departure for dinner | |
| 17:30 | Dinner at Market | |
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| Time | Topic | |
| 08:30 |
Distributing and version tracking your code
- Introduction to version control and git [slides] - Practical tutorial: Git Computational notebooks - Introduction to Jupyter [slides] - Practical tutorial: Jupyter |
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| 12:00 | Lunch | |
| 13:00 |
Reproducible reports
- Introduction to R Markdown [slides] - Practical tutorial: R Markdown Containerization - Introduction to containers [slides] - Practical tutorial: Docker |
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| 16:00 | Wrap-up [slides] | |
| 16:30 | All done! | |
Teachers:
Rasmus Ågren
Leif Wigge
Viktor Jonsson