Schedule

The course will take place in the room 10:an (see travel info).

Please note that the schedule is under development and below is just a preliminary draft. Times and content will be changed.

Day 1 - 2019-11-18
Time Topic
10:30 Introduction to Reproducible Research
11:15 Data management and project organization
11:45 Lunch
12:45 Master your dependencies - environments and reproducibility
- Introduction to the package and environment manager Conda
- Practical tutorial: Conda
13:45 Organize your analysis using workflow managers
- Introduction to Snakemake
- Practical tutorial: Snakemake


Fika break ~14:30
16:45 Wrap-up
17:00 Free time!
17:30 Joint departure for dinner
18:00 Course dinner
Day 2 - 2019-11-19
Time Topic
09:00 Distributing and version tracking your code
- Introduction to version control and git
- Practical tutorial: Git


Computational notebooks
- Introduction to Jupyter
- Practical tutorial: Jupyter


Reproducible reports
- Introduction to R Markdown
- Practical tutorial: R Markdown


Fika break ~10:15
Lunch ~11:45
Fika break ~14:15
16:30 Wrap-up
17:00 Done for the day!
Day 3 - 2019-11-20
09:00 Containerization
- Introduction to containers
- Practical tutorial: Docker


More will be added...
16:30 All done!

Teachers:
Leif Wigge
John Sundh
TBD